Introduction | Setup | Step 1: Automated Annotation with match_ref | Bounding the search to the right tissue | Step 2: Verification and Exploration | Answering "Why was this annotation made?" | Answering "Is this annotation correct?" | Visual Confirmation with plot_seurat_dot | Step 3: Final Manual Curation | Using a Custom Marker Database | Additional Utilities | get_marker() | plot_marker_distribution()

Limma-voom workflow | Prepare data | Example Workflow: TCGA CHOL Project

Introduction | Setup | Basic Usage | Statistical Tests and Auto-Annotation | Method Chaining | Data Transformation with fun | Available Plot Types | Dumbbell Plot | Bubble Plot | Divergence Bar Chart | Lollipop Plot | Contour Plot | Scatter Plot with Ellipses | Donut Plot | Pie Chart | Reviewing Your Exploration History | Summary