Package: easybio
Title: Comprehensive Single-Cell Annotation and Transcriptomic Analysis
        Toolkit
Version: 1.3.0
Authors@R: 
    person("Wei", "Cui", email = "m2c.w@outlook.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0009-0004-8315-5899"))
Description: Provides a comprehensive toolkit for single-cell
        annotation with the 'CellMarker 3.0' database
        <https://bio-bigdata.hrbmu.edu.cn/CellMarker/>. Streamlines
        biological label assignment in single-cell RNA-seq data and
        facilitates transcriptomic analysis, including preparation of
        TCGA<https://portal.gdc.cancer.gov/> and
        GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential
        expression analysis and visualization of enrichment analysis
        results. Additional utility functions support various
        bioinformatics workflows. See Wei Cui (2024) <doi:
        10.1101/2024.09.14.609619> for more details.
URL: https://github.com/person-c/easybio
BugReports: https://github.com/person-c/easybio/issues
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: data.table (>= 1.15.0), checkmate, ggplot2, httr2, lifecycle,
        R6, xml2
Depends: R (>= 4.1.0)
LazyData: true
Suggests: litedown, patchwork, ggrepel, Seurat, limma, GEOquery, fgsea,
        BiocParallel, edgeR, testthat (>= 3.0.0),
biocViews: limma, GEOquery, edgeR, fgsea
Language: en-US
VignetteBuilder: litedown
Config/testthat/edition: 3
Config/pak/sysreqs: libxml2-dev libssl-dev
Repository: https://person-c.r-universe.dev
Date/Publication: 2026-10-07 11:03:10 UTC
RemoteUrl: https://github.com/person-c/easybio
RemoteRef: HEAD
RemoteSha: a070c6e02cb93683940e3edbb51d74348c98ec35
NeedsCompilation: no
Packaged: 2026-10-11 12:13:22 UTC; root
Author: Wei Cui [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0004-8315-5899>)
Maintainer: Wei Cui <m2c.w@outlook.com>